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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
13
DNase-seq
4
ATAC-seq
Assay category
17
DNA accessibility
17
DNA binding
Target of assay
10
histone
10
histone modification
7
RNA binding protein
7
transcription factor
6
narrow histone mark
4
broad histone mark
Date released
21
June, 2019
5
October, 2018
3
August, 2017
3
October, 2019
1
November, 2018
1
November, 2020
Available data
600
bam
576
bigWig
483
tsv
108
bed narrowPeak
101
fastq
34
bigBed narrowPeak
31
bed bed3+
22
tagAlign
14
bed broadPeak
13
bigBed broadPeak
6
bed bed3
4
bed bedMethyl
4
bed bedgraph
4
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
34
Homo sapiens
Biosample type
18
primary cell
13
tissue
3
in vitro differentiated cells
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
34
AMP
Genome assembly (visualization)
33
hg19
31
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
DNase-seq
ATAC-seq
primary cell
cardiac fibroblast
3
3
mesenchymal stem cell
6
retinal pigment epithelial cell
2
1
brain pericyte
1
hepatic stellate cell
1
+ See 1 more…
tissue
omental fat pad
3
2
retina
3
subcutaneous adipose tissue
2
1
adipose tissue
1
1
in vitro differentiated cells
adipocyte
1
2
See all biosamples
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