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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
5
ChIP-seq
4
DNase-seq
4
pCHi-C
1
ATAC-seq
1
RRBS
Assay category
14
Transcription
5
DNA accessibility
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
February, 2023
21
October, 2019
7
June, 2019
February, 2020
1
July, 2019
Available data
7
bam
6
bed narrowPeak
6
bigBed narrowPeak
6
bigWig
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
29
Homo sapiens
Biosample type
24
tissue
5
primary cell
Organ
889
pancreas
790
liver
668
connective tissue
488
adipose tissue
472
epithelium
354
heart
354
kidney
273
brain
198
vasculature
192
blood vessel
151
bone element
119
limb
104
artery
94
musculature of body
69
blood
69
bodily fluid
42
nerve
37
embryo
29
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
29
AMP
Genome assembly (visualization)
7
hg19
6
GRCh38
Lab
29
AMP-T2D consortium
month_released!
February, 2023
February, 2020
BIOSAMPLE
ASSAY
29 results
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total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
ATAC-seq
RRBS
tissue
islet of Langerhans
14
2
4
1
retina
3
primary cell
retinal pigment epithelial cell
3
1
1
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