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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
total RNA-seq
24
ChIP-seq
4
pCHi-C
1
ATAC-seq
1
GRO-seq
1
RRBS
Assay category
29
Transcription
24
DNA binding
1
DNA accessibility
1
DNA methylation
Target of assay
14
histone
14
histone modification
10
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
February, 2023
21
October, 2019
13
December, 2017
13
February, 2018
8
August, 2021
June, 2019
2
May, 2021
1
February, 2020
1
January, 2018
1
July, 2019
Available data
36
bam
29
bigWig
27
fastq
15
tsv
14
bed narrowPeak
3
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
60
Homo sapiens
Biosample type
29
in vitro differentiated cells
22
tissue
8
cell line
1
primary cell
Organ
886
pancreas
789
liver
652
connective tissue
489
adipose tissue
452
epithelium
322
heart
273
kidney
255
brain
194
vasculature
190
blood vessel
151
bone element
104
artery
90
limb
69
blood
69
bodily fluid
53
musculature of body
43
nerve
37
embryo
25
spleen
23
eye
22
vein
20
lung
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
30
hg19
29
GRCh38
1
hg18
Lab
60
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
February, 2023
June, 2019
BIOSAMPLE
ASSAY
60 results
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total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
GRO-seq
RRBS
in vitro differentiated cells
pancreatic endoderm
4
18
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
islet of Langerhans
14
2
4
1
retina
1
cell line
H1-hESC
8
primary cell
retinal pigment epithelial cell
1
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