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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
total RNA-seq
6
DNase-seq
4
pCHi-C
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
1
RRBS
Assay category
22
DNA binding
8
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
28
October, 2019
February, 2023
7
June, 2019
1
July, 2019
1
March, 2020
Available data
27
bam
21
bigWig
19
bed narrowPeak
19
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
37
Homo sapiens
Biosample type
27
primary cell
10
tissue
Organ
602
liver
529
pancreas
380
epithelium
294
kidney
285
heart
268
brain
200
connective tissue
140
vasculature
134
blood vessel
115
limb
93
bone element
92
adipose tissue
90
musculature of body
69
blood
69
bodily fluid
50
artery
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
15
eye
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
37
AMP
Genome assembly (visualization)
24
hg19
18
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
February, 2023
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
DNase-seq
pCHi-C
Hi-C
ATAC-seq
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
17
2
2
1
retinal pigment epithelial cell
3
1
1
tissue
islet of Langerhans
2
4
1
retina
3
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