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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
15
total RNA-seq
6
DNase-seq
4
pCHi-C
2
ATAC-seq
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
23
DNA binding
15
Transcription
9
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
44
October, 2019
February, 2023
7
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
28
bam
22
bigWig
20
bed narrowPeak
19
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tagAlign
1
tar
1
tsv
Organism
54
Homo sapiens
Biosample type
27
primary cell
27
tissue
Organ
890
pancreas
791
liver
670
connective tissue
490
adipose tissue
472
epithelium
357
heart
354
kidney
285
brain
201
vasculature
195
blood vessel
151
bone element
122
limb
106
artery
96
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
54
AMP
Genome assembly (visualization)
25
hg19
19
GRCh38
Lab
54
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
February, 2023
BIOSAMPLE
ASSAY
54 results
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ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
ATAC-seq
Hi-C
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
17
2
2
1
retinal pigment epithelial cell
3
1
1
tissue
islet of Langerhans
2
14
4
2
retina
1
3
pituitary gland
1
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