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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
25
ChIP-seq
19
total RNA-seq
5
DNase-seq
5
pCHi-C
2
WGBS
Assay category
34
DNA accessibility
25
DNA binding
19
Transcription
2
DNA methylation
Target of assay
9
control
9
histone
9
histone modification
7
transcription factor
5
narrow histone mark
4
broad histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
31
February, 2023
21
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
June, 2019
1
February, 2020
July, 2019
1
March, 2020
1
October, 2017
Available data
47
bed narrowPeak
31
bam
24
fastq
22
bigWig
19
bigBed narrowPeak
6
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
85
Homo sapiens
Biosample type
81
tissue
4
primary cell
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
343
kidney
328
heart
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
47
hg19
22
GRCh38
Lab
85
AMP-T2D consortium
month_released!
July, 2019
BIOSAMPLE
ASSAY
85 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
WGBS
tissue
spleen
1
20
1
1
2
islet of Langerhans
1
2
14
4
retina
15
3
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
3
1
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