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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
29
ATAC-seq
19
total RNA-seq
8
snATAC-seq
4
pCHi-C
1
RRBS
Assay category
62
DNA binding
37
DNA accessibility
19
Transcription
1
DNA methylation
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
3
histone
3
histone modification
3
narrow histone mark
Date released
31
February, 2023
27
December, 2018
21
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
June, 2019
1
February, 2020
1
January, 2018
1
July, 2019
Available data
81
bed narrowPeak
60
bam
60
fastq
55
bigWig
54
bigBed narrowPeak
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
123
Homo sapiens
Biosample type
61
cell line
53
tissue
9
primary cell
Organ
942
pancreas
789
liver
666
connective tissue
504
epithelium
490
adipose tissue
318
heart
273
kidney
256
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
115
AMP
8
T1D
Genome assembly (visualization)
83
hg19
54
GRCh38
Lab
115
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
June, 2019
BIOSAMPLE
ASSAY
123 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
pCHi-C
RRBS
cell line
GM12878
60
1
tissue
islet of Langerhans
2
1
14
4
retina
15
3
pigmented layer of retina
12
2
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
1
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