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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
36
DNase-seq
20
total RNA-seq
17
ATAC-seq
6
Hi-C
5
RRBS
5
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
54
DNA accessibility
41
DNA binding
23
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
6
control
Date released
46
June, 2019
26
August, 2017
21
October, 2019
17
February, 2023
10
July, 2019
7
May, 2019
5
March, 2020
February, 2020
2
May, 2022
1
January, 2018
Available data
78
bed narrowPeak
71
bigWig
60
bam
50
bigBed narrowPeak
49
bed broadPeak
37
bed bed3+
36
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
135
Homo sapiens
Biosample type
121
tissue
14
primary cell
Organ
945
pancreas
790
liver
682
connective tissue
epithelium
489
adipose tissue
390
heart
354
kidney
274
brain
233
vasculature
227
blood vessel
159
bone element
139
artery
119
limb
94
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
135
AMP
Genome assembly (visualization)
91
hg19
56
GRCh38
Lab
135
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
organ_slims!
epithelium
month_released!
February, 2020
BIOSAMPLE
ASSAY
135 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
1
islet of Langerhans
2
14
1
4
muscle of leg
7
13
1
retina
3
2
15
muscle of arm
17
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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