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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
77
total RNA-seq
62
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
5
pCHi-C
2
WGBS
1
Hi-C
Assay category
83
Transcription
81
DNA binding
71
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
56
histone
56
histone modification
36
broad histone mark
20
narrow histone mark
18
control
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
52
February, 2023
50
May, 2019
47
October, 2019
8
July, 2019
7
June, 2019
6
August, 2021
4
February, 2020
3
March, 2020
Available data
158
bam
131
bed narrowPeak
131
bigWig
70
tsv
66
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
243
Homo sapiens
Biosample type
175
tissue
66
cell line
2
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
243
AMP
Genome assembly (visualization)
174
GRCh38
154
hg19
Lab
243
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
243 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
WGBS
Hi-C
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
1
2
1
islet of Langerhans
2
14
1
4
retina
3
15
3
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
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