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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
76
total RNA-seq
62
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
4
pCHi-C
2
WGBS
Assay category
82
Transcription
81
DNA binding
71
DNA accessibility
2
DNA methylation
Target of assay
56
histone
56
histone modification
36
broad histone mark
20
narrow histone mark
18
control
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
52
February, 2023
50
May, 2019
47
October, 2019
8
July, 2019
7
June, 2019
6
August, 2021
4
February, 2020
March, 2020
Available data
157
bam
131
bed narrowPeak
130
bigWig
68
tsv
66
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
240
Homo sapiens
Biosample type
172
tissue
66
cell line
2
primary cell
Organ
932
pancreas
788
liver
682
connective tissue
epithelium
490
adipose tissue
386
heart
352
kidney
284
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
240
AMP
Genome assembly (visualization)
173
GRCh38
152
hg19
Lab
240
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
month_released!
March, 2020
BIOSAMPLE
ASSAY
240 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
WGBS
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
islet of Langerhans
2
14
1
4
retina
3
15
3
aorta
13
4
2
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
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