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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
14
total RNA-seq
1
DNase-seq
1
GRO-seq
1
RRBS
Assay category
25
DNA binding
14
Transcription
1
DNA accessibility
1
DNA methylation
Target of assay
13
histone
13
histone modification
9
narrow histone mark
8
control
4
broad histone mark
4
transcription factor
1
RNA binding protein
Date released
13
December, 2017
13
February, 2018
8
August, 2021
4
June, 2019
2
May, 2021
1
January, 2018
1
July, 2019
Available data
40
bam
32
bigWig
27
fastq
17
bed narrowPeak
14
tsv
4
bed bed3+
3
bigBed narrowPeak
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
42
Homo sapiens
Biosample type
tissue
29
in vitro differentiated cells
8
cell line
5
primary cell
Organ
509
epithelium
441
pancreas
430
liver
137
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
42
AMP
Genome assembly (visualization)
33
hg19
32
GRCh38
1
hg18
Lab
42
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
organ_slims!
lung
biosample_type!
tissue
BIOSAMPLE
ASSAY
42 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
GRO-seq
RRBS
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
retinal pigment epithelial cell
3
1
1
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