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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
36
total RNA-seq
33
ChIP-seq
32
ATAC-seq
6
pCHi-C
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
1
FAIRE-seq
Assay category
69
DNA accessibility
43
Transcription
33
DNA binding
3
3D chromatin structure
3
DNA methylation
Target of assay
histone
190
histone modification
120
narrow histone mark
70
broad histone mark
32
control
4
RNA binding protein
4
transcription factor
Date released
36
June, 2019
32
February, 2023
28
October, 2019
19
July, 2019
18
November, 2017
13
February, 2020
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
Available data
83
bam
68
bed narrowPeak
61
bigWig
41
bigBed narrowPeak
39
bed bed3+
39
bed broadPeak
39
bigBed broadPeak
31
tsv
19
tagAlign
11
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
Organism
157
Homo sapiens
Biosample type
135
tissue
22
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
157
AMP
Genome assembly (visualization)
80
hg19
54
GRCh38
Lab
157
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
lung
target.investigated_as!
histone
BIOSAMPLE
ASSAY
157 results
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DNase-seq
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
tissue
retina
3
3
15
brain
14
1
3
1
1
islet of Langerhans
14
2
4
pigmented layer of retina
2
12
cerebellum (Hemisphere)
1
1
2
1
1
+ See 31 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
retinal pigment epithelial cell
1
2
1
brain pericyte
1
1
+ See 3 more…
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