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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ATAC-seq
22
DNase-seq
1
FAIRE-seq
Assay category
218
Transcription
142
DNA accessibility
131
DNA binding
53
DNA methylation
8
3D chromatin structure
Date released
39
May, 2022
27
February, 2023
17
June, 2019
16
May, 2021
14
September, 2018
8
October, 2019
7
August, 2020
5
September, 2017
3
August, 2017
3
September, 2020
2
March, 2020
1
November, 2019
Available data
72
bed narrowPeak
55
bigWig
45
bam
43
bigBed narrowPeak
39
zippedFastqFolder
32
fastq
19
bed bed3+
19
bed broadPeak
19
bigBed broadPeak
1
tar
1
tsv
Organism
142
Homo sapiens
Biosample type
91
primary cell
31
tissue
20
cell line
Organ
173
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
93
AMP
49
HPAP
Genome assembly (visualization)
68
hg19
54
GRCh38
Lab
93
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
21
inconsistent ontology term
organ_slims!
pericardium
BIOSAMPLE
ASSAY
142 results
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ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
endothelial cell of umbilical vein
2
1
+ See 13 more…
tissue
retina
15
3
pigmented layer of retina
12
islet of Langerhans
1
cell line
EndoC_BH1
19
glomerular visceral epithelial cell
1
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