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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
20
ChIP-seq
6
DNase-seq
3
ATAC-seq
3
small RNA-seq
2
WGBS
Assay category
399
Transcription
20
DNA binding
9
DNA accessibility
2
DNA methylation
Target of assay
18
transcription factor
6
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
16
August, 2017
12
July, 2019
7
June, 2019
5
October, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
429
bam
428
bigWig
398
tsv
23
fastq
17
bed narrowPeak
15
bigBed narrowPeak
10
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
430
Homo sapiens
Biosample type
425
tissue
5
primary cell
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
226
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
430
AMP
Genome assembly (visualization)
460
hg19
430
GRCh38
Lab
430
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
430 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
tissue
adipose tissue
382
1
2
white adipose tissue
12
omental fat pad
4
3
2
1
1
subcutaneous adipose tissue
6
2
1
1
retina
3
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primary cell
retinal pigment epithelial cell
2
1
mesenchymal stem cell of adipose
1
1
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