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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
416
total RNA-seq
75
ChIP-seq
34
ATAC-seq
6
WGBS
6
pCHi-C
5
DNase-seq
2
small RNA-seq
1
RNA microarray
Assay category
418
Transcription
75
DNA binding
39
DNA accessibility
6
DNA methylation
Target of assay
34
histone
34
histone modification
24
control
20
broad histone mark
17
transcription factor
14
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
32
February, 2023
23
October, 2018
22
October, 2019
10
July, 2019
4
June, 2019
3
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
443
bam
426
bigWig
404
tsv
44
fastq
43
bed narrowPeak
13
bigBed narrowPeak
9
bed bed3+
8
tagAlign
6
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
544
Homo sapiens
Biosample type
544
tissue
primary cell
1
in vitro differentiated cells
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
340
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
545
AMP
Genome assembly (visualization)
454
hg19
425
GRCh38
Lab
545
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
biosample_type!
primary cell
BIOSAMPLE
ASSAY
545 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
DNase-seq
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
islet of Langerhans
14
2
1
4
retina
3
15
3
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in vitro differentiated cells
white fat cell
1
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