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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
40
DNase-seq
37
ATAC-seq
26
total RNA-seq
8
snATAC-seq
4
Hi-C
4
pCHi-C
1
RRBS
1
WGBS
Assay category
131
DNA binding
85
DNA accessibility
26
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
53
histone
53
histone modification
52
transcription factor
34
broad histone mark
24
control
19
narrow histone mark
11
RNA binding protein
10
chromatin remodeller
Date released
90
October, 2019
39
June, 2019
31
February, 2023
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
7
May, 2019
6
February, 2021
6
July, 2019
4
February, 2020
1
January, 2018
Available data
181
bam
179
bed narrowPeak
152
bigWig
144
bigBed narrowPeak
60
fastq
40
bed bed3+
40
bed broadPeak
40
bigBed broadPeak
12
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
252
Homo sapiens
Biosample type
178
tissue
61
cell line
13
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
244
AMP
8
T1D
Genome assembly (visualization)
185
hg19
156
GRCh38
Lab
244
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
BIOSAMPLE
ASSAY
252 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
snATAC-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
islet of Langerhans
3
1
14
4
muscle of leg
7
13
1
retina
3
15
3
+ See 11 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
3
1
1
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