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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
29
ATAC-seq
19
total RNA-seq
8
snATAC-seq
6
DNase-seq
4
pCHi-C
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
82
DNA binding
44
DNA accessibility
19
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
52
transcription factor
19
histone
19
histone modification
11
RNA binding protein
10
chromatin remodeller
10
narrow histone mark
9
broad histone mark
9
control
Date released
42
October, 2019
31
February, 2023
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
7
June, 2019
1
February, 2020
1
January, 2018
1
July, 2019
1
March, 2020
Available data
100
bed narrowPeak
87
bam
76
bigWig
73
bigBed narrowPeak
60
fastq
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
5
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
152
Homo sapiens
Biosample type
61
cell line
56
tissue
35
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
144
AMP
8
T1D
Genome assembly (visualization)
106
hg19
72
GRCh38
Lab
144
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
BIOSAMPLE
ASSAY
152 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
FAIRE-seq
RRBS
cell line
GM12878
60
1
tissue
islet of Langerhans
2
1
14
4
retina
15
3
3
pigmented layer of retina
12
2
primary cell
endothelial cell of umbilical vein
17
2
2
1
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
3
1
1
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