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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
66
ATAC-seq
26
total RNA-seq
8
DNase-seq
6
single cell RNA-seq
pCHi-C
2
WGBS
1
Hi-C
Assay category
75
DNA binding
74
DNA accessibility
32
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
56
histone
56
histone modification
36
broad histone mark
20
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
66
February, 2023
50
May, 2019
43
October, 2019
7
July, 2019
6
August, 2021
6
June, 2019
4
February, 2020
2
March, 2020
Available data
130
bed narrowPeak
90
bam
73
bigWig
65
bigBed narrowPeak
18
tsv
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
184
Homo sapiens
Biosample type
184
tissue
66
cell line
36
primary cell
Organ
546
connective tissue
504
pancreas
487
adipose tissue
360
liver
310
heart
299
kidney
263
brain
158
bone element
132
blood vessel
132
vasculature
122
limb
81
musculature of body
73
artery
52
eye
43
nerve
24
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
184
AMP
Genome assembly (visualization)
108
GRCh38
100
hg19
Lab
184
AMP-T2D consortium
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
184 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
single cell RNA-seq
WGBS
Hi-C
tissue
coronary artery
5
36
1
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
retina
15
3
3
ascending aorta
16
2
1
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