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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
78
total RNA-seq
74
ATAC-seq
8
DNase-seq
6
single cell RNA-seq
5
pCHi-C
1
Hi-C
Assay category
84
Transcription
82
DNA accessibility
81
DNA binding
DNA methylation
1
3D chromatin structure
Target of assay
56
histone
56
histone modification
36
broad histone mark
20
narrow histone mark
18
control
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
66
February, 2023
50
May, 2019
47
October, 2019
6
August, 2021
6
June, 2019
5
July, 2019
4
February, 2020
3
March, 2020
Available data
154
bam
142
bed narrowPeak
128
bigWig
71
tsv
65
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
6
tagAlign
1
bedpe bed3+
1
hic
Organism
253
Homo sapiens
Biosample type
187
tissue
66
cell line
primary cell
Organ
771
liver
639
connective tissue
594
pancreas
483
adipose tissue
371
heart
317
kidney
264
brain
197
blood vessel
197
vasculature
158
bone element
139
artery
121
limb
118
epithelium
77
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
23
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
253
AMP
Genome assembly (visualization)
171
GRCh38
164
hg19
Lab
253
AMP-T2D consortium
biosample_type!
primary cell
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
253 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
Hi-C
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
islet of Langerhans
2
14
1
4
retina
3
15
3
aorta
13
1
4
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
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