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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
14
total RNA-seq
4
DNase-seq
4
pCHi-C
2
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
42
DNA binding
14
Transcription
7
DNA accessibility
1
3D chromatin structure
Target of assay
35
histone
35
histone modification
23
broad histone mark
12
narrow histone mark
7
control
Date released
68
October, 2019
66
February, 2021
66
February, 2023
50
May, 2019
12
July, 2019
12
June, 2019
6
August, 2021
4
February, 2020
3
November, 2017
2
March, 2020
Available data
46
bam
36
bigWig
34
bed narrowPeak
33
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
4
bed bed3+
1
hic
1
tar
Organism
68
Homo sapiens
Biosample type
47
tissue
21
primary cell
Organ
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
35
epithelium
30
kidney
26
artery
21
eye
21
vein
18
pancreas
7
heart
7
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
68
AMP
Genome assembly (visualization)
37
hg19
33
GRCh38
Lab
68
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
ATAC-seq
FAIRE-seq
Hi-C
tissue
tibial artery
23
2
1
islet of Langerhans
2
14
4
1
primary cell
endothelial cell of umbilical vein
17
2
1
1
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