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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
36
total RNA-seq
32
ATAC-seq
6
pCHi-C
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
2
DNase-seq
1
FAIRE-seq
Assay category
220
DNA binding
43
Transcription
35
DNA accessibility
3
3D chromatin structure
3
DNA methylation
Target of assay
189
histone
189
histone modification
119
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
107
October, 2019
91
November, 2017
June, 2019
32
February, 2023
28
May, 2019
19
July, 2019
16
October, 2017
13
February, 2020
2
March, 2020
2
November, 2018
Available data
213
bam
200
bed narrowPeak
192
bigWig
118
tagAlign
97
bigBed narrowPeak
31
tsv
21
fastq
17
bed broadPeak
8
bigBed broadPeak
5
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
310
Homo sapiens
Biosample type
293
tissue
17
primary cell
Organ
942
pancreas
789
liver
666
connective tissue
504
epithelium
490
adipose tissue
358
heart
273
kidney
256
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
310
AMP
Genome assembly (visualization)
187
GRCh38
172
hg19
Lab
310
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
June, 2019
BIOSAMPLE
ASSAY
310 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
DNase-seq
FAIRE-seq
tissue
brain
20
1
1
1
2
layer of hippocampus
23
islet of Langerhans
2
14
2
4
retina
3
15
substantia nigra
16
1
+ See 74 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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