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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
36
total RNA-seq
35
DNase-seq
32
ATAC-seq
6
pCHi-C
4
small RNA-seq
3
RRBS
3
single cell RNA-seq
2
Hi-C
1
FAIRE-seq
Assay category
220
DNA binding
68
DNA accessibility
43
Transcription
3
DNA methylation
2
3D chromatin structure
Target of assay
189
histone
189
histone modification
119
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
107
October, 2019
88
November, 2017
36
June, 2019
32
February, 2023
28
May, 2019
18
July, 2019
16
October, 2017
13
February, 2020
2
March, 2020
2
November, 2018
Available data
246
bam
233
bed narrowPeak
223
bigWig
130
bigBed narrowPeak
118
tagAlign
48
bed broadPeak
39
bigBed broadPeak
37
bed bed3+
31
tsv
18
fastq
3
bed bedMethyl
3
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
342
Homo sapiens
Biosample type
321
tissue
21
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
342
AMP
Genome assembly (visualization)
220
GRCh38
193
hg19
Lab
342
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
342 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
Hi-C
FAIRE-seq
tissue
brain
20
1
14
1
1
layer of hippocampus
23
islet of Langerhans
2
14
2
4
retina
3
3
15
caudate nucleus
15
1
1
+ See 79 more…
primary cell
astrocyte of the cerebellum
3
1
1
choroid plexus epithelial cell
3
1
1
retinal pigment epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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