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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
35
DNase-seq
32
ATAC-seq
6
pCHi-C
3
RRBS
2
Hi-C
1
FAIRE-seq
Assay category
220
DNA binding
68
DNA accessibility
Transcription
3
DNA methylation
2
3D chromatin structure
Target of assay
189
histone
189
histone modification
119
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
92
October, 2019
88
November, 2017
36
June, 2019
28
February, 2023
28
May, 2019
16
October, 2017
7
July, 2019
2
March, 2020
2
November, 2018
Available data
234
bam
233
bed narrowPeak
211
bigWig
130
bigBed narrowPeak
118
tagAlign
48
bed broadPeak
39
bigBed broadPeak
37
bed bed3+
18
fastq
3
bed bedMethyl
3
bigBed bedMethyl
2
hdf5
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
299
Homo sapiens
Biosample type
281
tissue
18
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
299
AMP
Genome assembly (visualization)
208
GRCh38
181
hg19
Lab
299
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
blood vessel
assay_slims!
Transcription
BIOSAMPLE
ASSAY
299 results
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ChIP-seq
DNase-seq
ATAC-seq
pCHi-C
RRBS
Hi-C
FAIRE-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
retina
3
15
caudate nucleus
15
1
substantia nigra
16
+ See 75 more…
primary cell
astrocyte of the cerebellum
3
1
1
choroid plexus epithelial cell
3
1
1
retinal pigment epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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