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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
34
total RNA-seq
33
DNase-seq
20
ATAC-seq
6
pCHi-C
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
214
DNA binding
54
DNA accessibility
41
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
29
control
1
RNA binding protein
1
transcription factor
Date released
107
October, 2019
85
November, 2017
31
June, 2019
28
May, 2019
18
February, 2023
16
July, 2019
16
October, 2017
13
February, 2020
2
March, 2020
2
November, 2018
Available data
238
bam
216
bigWig
215
bed narrowPeak
124
bigBed narrowPeak
118
tagAlign
44
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
29
tsv
15
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
318
Homo sapiens
Biosample type
307
tissue
11
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
318
AMP
Genome assembly (visualization)
214
GRCh38
172
hg19
Lab
318
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
blood vessel
epithelium
BIOSAMPLE
ASSAY
318 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
small RNA-seq
single cell RNA-seq
Hi-C
FAIRE-seq
RRBS
tissue
brain
20
1
14
1
1
layer of hippocampus
23
islet of Langerhans
2
14
2
4
retina
3
3
15
caudate nucleus
15
1
1
+ See 78 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
See all biosamples
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