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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ATAC-seq
84
total RNA-seq
47
WGBS
24
ChIP-seq
10
Hi-C
7
RRBS
6
MeRIP-seq
6
pCHi-C
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
99
DNA accessibility
84
Transcription
54
DNA methylation
24
DNA binding
10
3D chromatin structure
Target of assay
23
histone
23
histone modification
14
narrow histone mark
9
broad histone mark
4
control
3
nucleotide modification
Date released
80
May, 2022
70
February, 2023
27
October, 2019
19
September, 2020
16
May, 2021
13
February, 2020
13
November, 2017
11
July, 2019
7
August, 2020
7
October, 2017
6
February, 2021
6
November, 2020
5
March, 2020
3
October, 2022
2
August, 2021
1
December, 2019
1
November, 2019
Available data
bam
517
bigWig
366
bed narrowPeak
272
fastq
200
bigBed narrowPeak
185
tsv
125
tagAlign
80
zippedFastqFolder
66
bed broadPeak
57
bigBed broadPeak
56
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
5
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tagAlign bed3+
1
tar
Organism
286
Homo sapiens
Biosample type
166
primary cell
93
tissue
28
cell line
Organ
257
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
152
HPAP
135
AMP
Genome assembly (visualization)
50
hg19
12
GRCh38
Lab
152
Klaus Kaestner, Upenn
129
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
29
inconsistent ontology term
5
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bam
BIOSAMPLE
ASSAY
287 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
Hi-C
RRBS
MeRIP-seq
pCHi-C
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
+ See 11 more…
tissue
islet of Langerhans
2
14
2
4
retina
15
3
pigmented layer of retina
12
2
brain
1
7
1
cingulate gyrus
6
+ See 18 more…
cell line
EndoC_BH1
18
1
6
2
1
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