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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
223
ChIP-seq
44
ATAC-seq
40
total RNA-seq
36
DNase-seq
6
pCHi-C
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
1
FAIRE-seq
Assay category
223
DNA binding
81
DNA accessibility
47
Transcription
3
3D chromatin structure
3
DNA methylation
Target of assay
190
histone
190
histone modification
120
narrow histone mark
70
broad histone mark
32
control
4
RNA binding protein
4
transcription factor
Date released
107
October, 2019
91
November, 2017
40
February, 2023
37
June, 2019
28
May, 2019
19
July, 2019
16
October, 2017
13
February, 2020
8
February, 2021
2
March, 2020
2
November, 2018
Available data
258
bam
244
bed narrowPeak
228
bigWig
133
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
39
bed bed3+
31
tsv
21
fastq
5
bed bed3
4
txt
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
tagAlign bed3+
Organism
363
Homo sapiens
Biosample type
337
tissue
26
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
363
AMP
Genome assembly (visualization)
231
GRCh38
210
hg19
Lab
363
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
363 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
tissue
brain
20
1
1
14
1
layer of hippocampus
23
islet of Langerhans
2
2
14
4
retina
15
3
3
caudate nucleus
15
1
1
+ See 91 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
retinal pigment epithelial cell
3
1
1
brain pericyte
1
1
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