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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
219
ChIP-seq
36
DNase-seq
36
total RNA-seq
32
ATAC-seq
6
pCHi-C
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
1
FAIRE-seq
Assay category
219
DNA binding
69
DNA accessibility
43
Transcription
3
3D chromatin structure
3
DNA methylation
Target of assay
190
histone
190
histone modification
120
narrow histone mark
70
broad histone mark
32
control
RNA binding protein
4
transcription factor
Date released
107
October, 2019
88
November, 2017
36
June, 2019
32
February, 2023
28
May, 2019
19
July, 2019
16
October, 2017
13
February, 2020
2
March, 2020
2
November, 2018
Available data
246
bam
232
bed narrowPeak
224
bigWig
129
bigBed narrowPeak
118
tagAlign
48
bed broadPeak
39
bed bed3+
39
bigBed broadPeak
31
tsv
18
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
343
Homo sapiens
Biosample type
321
tissue
22
primary cell
Organ
937
pancreas
733
liver
674
connective tissue
516
epithelium
486
adipose tissue
351
kidney
347
heart
283
brain
231
vasculature
226
blood vessel
159
bone element
140
artery
122
limb
96
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
343
AMP
Genome assembly (visualization)
219
GRCh38
194
hg19
Lab
343
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
343 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
islet of Langerhans
2
14
2
4
retina
3
3
15
caudate nucleus
15
1
1
+ See 79 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
retinal pigment epithelial cell
2
1
1
brain pericyte
1
1
+ See 3 more…
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