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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
219
ChIP-seq
36
DNase-seq
36
total RNA-seq
ATAC-seq
6
pCHi-C
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
1
FAIRE-seq
Assay category
219
DNA binding
43
Transcription
37
DNA accessibility
3
3D chromatin structure
3
DNA methylation
Target of assay
190
histone
190
histone modification
120
narrow histone mark
70
broad histone mark
32
control
RNA binding protein
4
transcription factor
Date released
105
October, 2019
88
November, 2017
36
June, 2019
28
May, 2019
18
July, 2019
15
October, 2017
13
February, 2020
4
February, 2023
2
March, 2020
2
November, 2018
Available data
244
bam
222
bigWig
205
bed narrowPeak
129
bigBed narrowPeak
118
tagAlign
48
bed broadPeak
39
bed bed3+
39
bigBed broadPeak
31
tsv
17
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
tagAlign bed3+
Organism
311
Homo sapiens
Biosample type
289
tissue
22
primary cell
Organ
785
pancreas
710
liver
649
connective tissue
480
adipose tissue
413
epithelium
335
heart
279
brain
276
kidney
185
vasculature
180
blood vessel
147
bone element
114
limb
95
artery
95
musculature of body
58
blood
58
bodily fluid
42
nerve
37
embryo
32
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
311
AMP
Genome assembly (visualization)
217
GRCh38
166
hg19
Lab
311
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
target.investigated_as!
RNA binding protein
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
311 results
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ChIP-seq
DNase-seq
total RNA-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
islet of Langerhans
2
14
4
caudate nucleus
15
1
1
substantia nigra
16
1
+ See 78 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
retinal pigment epithelial cell
2
1
1
brain pericyte
1
1
+ See 3 more…
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