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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
14
total RNA-seq
4
DNase-seq
1
GRO-seq
Assay category
16
DNA binding
14
Transcription
4
DNA accessibility
Target of assay
12
histone
12
histone modification
8
narrow histone mark
4
broad histone mark
4
transcription factor
1
RNA binding protein
Date released
10
February, 2018
8
August, 2021
8
December, 2017
6
June, 2019
2
May, 2021
1
January, 2018
Available data
47
bed narrowPeak
43
bam
35
bigWig
27
fastq
19
tsv
7
bed bed3+
6
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
Organism
35
Homo sapiens
Biosample type
21
in vitro differentiated cells
8
cell line
3
primary cell
3
tissue
Organ
621
liver
619
pancreas
568
connective tissue
423
adipose tissue
301
epithelium
222
brain
218
heart
154
vasculature
149
blood vessel
131
kidney
90
limb
85
artery
67
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
15
vein
14
spleen
6
eye
1
pericardium
1
pituitary gland
Project
35
AMP
Genome assembly (visualization)
34
GRCh38
34
hg19
1
hg18
Lab
35
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
3
inconsistent control read length
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
35 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
12
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
retinal pigment epithelial cell
2
1
tissue
retina
3
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