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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
28
ATAC-seq
27
ChIP-seq
4
DNase-seq
4
pCHi-C
1
GRO-seq
1
RRBS
Assay category
32
DNA accessibility
27
DNA binding
1
DNA methylation
Target of assay
15
histone
15
histone modification
11
narrow histone mark
8
control
4
broad histone mark
4
transcription factor
1
RNA binding protein
Date released
27
February, 2023
13
December, 2017
9
February, 2018
7
June, 2019
7
October, 2019
1
January, 2018
1
July, 2019
Available data
47
bed narrowPeak
29
bam
23
fastq
21
bigWig
7
bed bed3+
6
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
65
Homo sapiens
Biosample type
37
tissue
23
in vitro differentiated cells
5
primary cell
Organ
602
liver
543
pancreas
393
epithelium
294
kidney
281
heart
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
49
hg19
21
GRCh38
1
hg18
Lab
65
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
65 results
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Clear Filters
ATAC-seq
ChIP-seq
DNase-seq
pCHi-C
GRO-seq
RRBS
tissue
retina
15
3
pigmented layer of retina
12
islet of Langerhans
1
2
4
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
primary cell
retinal pigment epithelial cell
3
1
1
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