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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
28
ATAC-seq
27
ChIP-seq
4
DNase-seq
4
pCHi-C
1
GRO-seq
Assay category
32
DNA accessibility
27
DNA binding
Target of assay
15
histone
15
histone modification
11
narrow histone mark
8
control
4
broad histone mark
4
transcription factor
1
RNA binding protein
Date released
27
February, 2023
13
December, 2017
9
February, 2018
7
June, 2019
7
October, 2019
1
January, 2018
Available data
47
bed narrowPeak
29
bam
23
fastq
21
bigWig
7
bed bed3+
6
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
bed bedMethyl
1
bigBed bedMethyl
Organism
64
Homo sapiens
Biosample type
37
tissue
23
in vitro differentiated cells
4
primary cell
Organ
599
liver
537
pancreas
387
epithelium
313
heart
290
kidney
267
brain
207
connective tissue
173
vasculature
168
blood vessel
114
limb
97
bone element
91
adipose tissue
86
musculature of body
85
artery
69
blood
69
bodily fluid
41
eye
38
nerve
23
embryo
23
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
48
hg19
21
GRCh38
1
hg18
Lab
64
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
total RNA-seq
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
64 results
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Clear Filters
ATAC-seq
ChIP-seq
DNase-seq
pCHi-C
GRO-seq
tissue
retina
15
3
pigmented layer of retina
12
islet of Langerhans
1
2
4
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
primary cell
retinal pigment epithelial cell
3
1
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