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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ATAC-seq
25
ChIP-seq
total RNA-seq
4
DNase-seq
1
GRO-seq
1
RRBS
Assay category
31
DNA accessibility
25
DNA binding
1
DNA methylation
Target of assay
13
histone
13
histone modification
9
narrow histone mark
8
control
4
broad histone mark
4
transcription factor
1
RNA binding protein
Date released
27
February, 2023
13
December, 2017
9
February, 2018
7
June, 2019
October, 2019
1
January, 2018
1
July, 2019
Available data
47
bed narrowPeak
29
bam
23
fastq
21
bigWig
7
bed bed3+
6
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
58
Homo sapiens
Biosample type
30
tissue
23
in vitro differentiated cells
5
primary cell
Organ
596
liver
525
pancreas
361
epithelium
315
heart
270
kidney
206
connective tissue
184
brain
128
vasculature
122
blood vessel
97
bone element
92
adipose tissue
90
musculature of body
69
blood
69
bodily fluid
59
artery
50
limb
35
eye
25
spleen
23
embryo
20
lung
18
ureter
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
stomach
1
urinary bladder
1
vein
Project
58
AMP
Genome assembly (visualization)
49
hg19
21
GRCh38
1
hg18
Lab
58
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
total RNA-seq
month_released!
October, 2019
BIOSAMPLE
ASSAY
58 results
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ATAC-seq
ChIP-seq
DNase-seq
GRO-seq
RRBS
tissue
retina
15
3
pigmented layer of retina
12
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
primary cell
retinal pigment epithelial cell
3
1
1
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