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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
28
ATAC-seq
27
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
5
pCHi-C
4
DNase-seq
1
GRO-seq
1
RRBS
Assay category
42
DNA accessibility
27
DNA binding
9
Transcription
1
DNA methylation
Target of assay
15
histone
15
histone modification
11
narrow histone mark
8
control
4
broad histone mark
4
transcription factor
1
RNA binding protein
Date released
27
February, 2023
19
April, 2020
13
December, 2017
9
February, 2018
7
June, 2019
7
October, 2019
1
January, 2018
1
July, 2019
1
March, 2020
Available data
47
bed narrowPeak
29
bam
23
fastq
21
bigWig
7
bed bed3+
6
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tsv
Organism
84
Homo sapiens
Biosample type
57
tissue
23
in vitro differentiated cells
5
primary cell
Organ
602
liver
543
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
66
AMP
19
LungMap
Genome assembly (visualization)
49
hg19
21
GRCh38
1
hg18
Lab
66
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
85 results
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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
GRO-seq
RRBS
tissue
lung
10
9
1
retina
15
3
pigmented layer of retina
12
islet of Langerhans
1
2
4
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
primary cell
retinal pigment epithelial cell
3
1
1
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