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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
pCHi-C
2
ChIP-seq
1
GRO-seq
Assay category
28
DNA accessibility
19
Transcription
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
31
February, 2023
21
October, 2019
1
February, 2020
1
January, 2018
Available data
47
bed narrowPeak
bam
35
bigWig
27
fastq
19
tsv
7
bed bed3+
6
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
bigBed bedMethyl
Organism
54
Homo sapiens
Biosample type
53
tissue
1
in vitro differentiated cells
Organ
255
pancreas
206
kidney
201
epithelium
180
heart
108
liver
93
bone element
90
connective tissue
53
eye
50
blood vessel
50
vasculature
49
adipose tissue
41
brain
39
artery
36
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
54
AMP
Genome assembly (visualization)
27
hg19
1
hg18
Lab
54
AMP-T2D consortium
files.file_type!
bam
bigBed bedMethyl
BIOSAMPLE
ASSAY
54 results
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ATAC-seq
total RNA-seq
pCHi-C
ChIP-seq
GRO-seq
tissue
islet of Langerhans
1
14
4
2
retina
15
3
pigmented layer of retina
12
2
in vitro differentiated cells
pancreatic endoderm
1
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