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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
total RNA-seq
10
ChIP-seq
4
pCHi-C
1
ATAC-seq
1
GRO-seq
Assay category
19
Transcription
10
DNA binding
1
DNA accessibility
Target of assay
7
control
3
histone
3
histone modification
3
narrow histone mark
Date released
21
October, 2019
4
December, 2017
4
February, 2023
3
February, 2018
1
February, 2020
1
January, 2018
1
June, 2019
Available data
8
bam
8
fastq
5
tsv
1
bigWig
Organism
35
Homo sapiens
Biosample type
26
tissue
8
in vitro differentiated cells
1
primary cell
Organ
285
pancreas
218
kidney
207
epithelium
202
heart
166
liver
112
brain
94
connective tissue
89
bone element
70
blood vessel
70
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
35
AMP
Genome assembly (visualization)
hg19
31
GRCh38
1
hg18
Lab
35
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed broadPeak
assembly!
hg19
BIOSAMPLE
ASSAY
35 results
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Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
GRO-seq
tissue
islet of Langerhans
14
2
4
1
retina
3
pigmented layer of retina
2
in vitro differentiated cells
pancreatic endoderm
5
1
Hepatic endoderm
2
primary cell
retinal pigment epithelial cell
1
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