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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ATAC-seq
72
total RNA-seq
47
WGBS
8
Hi-C
6
MeRIP-seq
6
RRBS
4
pCHi-C
2
Capture-C
2
ChIP-seq
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
87
DNA accessibility
72
Transcription
53
DNA methylation
8
3D chromatin structure
2
DNA binding
Target of assay
3
control
3
nucleotide modification
2
histone
2
histone modification
2
narrow histone mark
Date released
80
May, 2022
69
February, 2023
24
October, 2019
16
May, 2021
16
September, 2020
8
July, 2019
6
February, 2021
6
November, 2020
3
March, 2020
3
October, 2022
2
August, 2021
1
December, 2019
1
February, 2020
1
November, 2019
Available data
80
zippedFastqFolder
76
fastq
bam
28
bed narrowPeak
13
tsv
9
bigWig
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hdf5
2
tagAlign
1
bigBed narrowPeak
1
tar
Organism
235
Homo sapiens
Biosample type
154
primary cell
54
tissue
28
cell line
Organ
243
pancreas
197
epithelium
135
kidney
110
liver
107
heart
93
bone element
90
connective tissue
54
eye
48
adipose tissue
41
brain
39
musculature of body
20
lung
16
vasculature
15
blood vessel
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
4
artery
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
142
HPAP
94
AMP
Genome assembly (visualization)
43
hg19
GRCh38
Lab
142
Klaus Kaestner, Upenn
88
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
5
audit script error
assembly!
GRCh38
files.file_type!
bam
BIOSAMPLE
ASSAY
236 results
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ATAC-seq
total RNA-seq
WGBS
Hi-C
MeRIP-seq
RRBS
pCHi-C
Capture-C
ChIP-seq
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
22
42
31
1
pancreatic beta cell
13
11
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
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tissue
islet of Langerhans
1
14
4
2
retina
15
3
pigmented layer of retina
12
2
renal glomerulus
1
cell line
EndoC_BH1
18
1
6
2
1
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