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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ATAC-seq
22
ChIP-seq
20
DNase-seq
1
FAIRE-seq
Assay category
43
DNA accessibility
22
DNA binding
Target of assay
17
histone
17
histone modification
10
narrow histone mark
7
broad histone mark
5
RNA binding protein
5
transcription factor
Date released
21
June, 2019
December, 2017
14
October, 2019
14
September, 2018
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2017
Available data
301
bam
288
bigWig
238
fastq
159
tsv
153
bed narrowPeak
80
zippedFastqFolder
65
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
24
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
65
Homo sapiens
Biosample type
61
primary cell
3
tissue
1
cell line
Organ
308
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
62
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
65
AMP
Genome assembly (visualization)
64
GRCh38
59
hg19
Lab
65
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
month_released!
December, 2017
BIOSAMPLE
ASSAY
65 results
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ATAC-seq
ChIP-seq
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
pancreatic alpha cell
6
kidney epithelial cell
4
1
pancreatic acinar cell
5
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tissue
retina
3
cell line
glomerular visceral epithelial cell
1
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