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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
22
ATAC-seq
17
DNase-seq
Assay category
39
DNA accessibility
26
DNA binding
Target of assay
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
21
June, 2019
14
December, 2017
October, 2019
14
September, 2018
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2017
Available data
288
bam
279
bigWig
257
fastq
156
tsv
148
bed narrowPeak
80
zippedFastqFolder
65
bigBed narrowPeak
22
bed bed3+
21
bed broadPeak
21
bigBed broadPeak
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
5
bedpe bed3+
5
hic
3
cool
2
hdf5
Organism
65
Homo sapiens
Biosample type
48
primary cell
14
in vitro differentiated cells
3
tissue
Organ
358
liver
127
brain
103
kidney
94
heart
84
pancreas
62
epithelium
54
blood
54
bodily fluid
50
vasculature
47
musculature of body
46
blood vessel
38
limb
25
connective tissue
18
ureter
13
spleen
9
adipose tissue
6
eye
5
artery
Project
65
AMP
Genome assembly (visualization)
65
GRCh38
59
hg19
Lab
65
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
ATAC-seq
DNase-seq
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
kidney epithelial cell
4
1
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 11 more…
in vitro differentiated cells
hepatocyte
14
tissue
retina
3
See all biosamples
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