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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
157
ChIP-seq
49
ATAC-seq
7
DNase-seq
5
pCHi-C
4
WGBS
3
small RNA-seq
1
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
193
Transcription
157
DNA binding
56
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
72
histone modification
71
histone
46
control
46
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
48
December, 2017
40
May, 2022
31
February, 2023
27
October, 2019
8
July, 2019
7
November, 2018
3
June, 2019
3
March, 2020
2
February, 2020
1
February, 2021
Available data
291
bam
268
bigWig
159
tsv
143
bed narrowPeak
83
fastq
70
tagAlign
52
bigBed narrowPeak
9
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
417
Homo sapiens
Biosample type
417
tissue
401
cell line
19
primary cell
15
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
417
AMP
Genome assembly (visualization)
298
hg19
241
GRCh38
Lab
377
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
417 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
tissue
liver
167
145
20
2
1
3
1
1
1
1
islet of Langerhans
14
2
1
4
retina
3
15
3
right lobe of liver
3
10
1
2
1
2
pigmented layer of retina
2
12
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