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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
DNase-seq
29
ATAC-seq
25
total RNA-seq
22
ChIP-seq
6
Hi-C
5
pCHi-C
2
RRBS
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
67
DNA accessibility
28
Transcription
22
DNA binding
6
3D chromatin structure
3
DNA methylation
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
4
control
1
RNA binding protein
1
transcription factor
Date released
50
June, 2019
31
February, 2023
August, 2017
21
October, 2019
11
July, 2019
7
May, 2019
5
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
Available data
80
bed narrowPeak
64
bam
61
bigWig
53
bigBed narrowPeak
38
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
14
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
131
Homo sapiens
Biosample type
112
tissue
19
primary cell
Organ
758
pancreas
737
liver
559
connective tissue
495
epithelium
434
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
70
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
131
AMP
Genome assembly (visualization)
92
hg19
59
GRCh38
Lab
131
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
August, 2017
BIOSAMPLE
ASSAY
131 results
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DNase-seq
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
islet of Langerhans
1
14
2
4
muscle of leg
13
7
1
retina
3
15
3
muscle of arm
17
pigmented layer of retina
12
2
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primary cell
skeletal muscle satellite cell
1
8
1
retinal pigment epithelial cell
1
3
1
skeletal muscle cell
1
2
1
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