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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
37
DNase-seq
29
ATAC-seq
23
total RNA-seq
6
RRBS
4
Hi-C
4
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
67
DNA accessibility
44
DNA binding
26
Transcription
7
DNA methylation
4
3D chromatin structure
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
7
control
1
RNA binding protein
1
transcription factor
Date released
50
June, 2019
31
February, 2023
26
August, 2017
21
October, 2019
11
July, 2019
7
May, 2019
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
Available data
93
bed narrowPeak
72
bigWig
62
bam
53
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
11
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
fastq
1
txt
Organism
152
Homo sapiens
Biosample type
133
tissue
19
primary cell
Organ
932
pancreas
788
liver
682
connective tissue
518
epithelium
490
adipose tissue
352
kidney
346
heart
284
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
152
AMP
Genome assembly (visualization)
103
hg19
57
GRCh38
Lab
152
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
March, 2020
BIOSAMPLE
ASSAY
152 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
RRBS
Hi-C
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
1
islet of Langerhans
2
1
14
4
muscle of leg
7
13
1
retina
3
15
3
muscle of arm
17
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primary cell
skeletal muscle satellite cell
8
1
1
retinal pigment epithelial cell
3
1
1
skeletal muscle cell
2
1
1
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