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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ATAC-seq
26
ChIP-seq
19
total RNA-seq
5
DNase-seq
5
pCHi-C
2
WGBS
1
RRBS
Assay category
35
DNA accessibility
26
DNA binding
19
Transcription
3
DNA methylation
Target of assay
10
histone
10
histone modification
9
control
7
transcription factor
6
narrow histone mark
4
broad histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
31
February, 2023
23
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
1
October, 2017
Available data
48
bed narrowPeak
32
bam
24
fastq
23
bigWig
19
bigBed narrowPeak
6
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
tagAlign
Organism
88
Homo sapiens
Biosample type
83
tissue
5
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
49
hg19
23
GRCh38
Lab
88
AMP-T2D consortium
BIOSAMPLE
ASSAY
88 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
WGBS
RRBS
tissue
spleen
1
20
1
1
2
islet of Langerhans
2
2
14
4
retina
15
3
3
pigmented layer of retina
12
2
pituitary gland
1
primary cell
retinal pigment epithelial cell
3
1
1
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