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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
23
ChIP-seq
5
DNase-seq
5
total RNA-seq
2
WGBS
1
RRBS
1
pCHi-C
Assay category
33
DNA accessibility
23
DNA binding
5
Transcription
3
DNA methylation
Target of assay
9
control
7
histone
7
histone modification
7
transcription factor
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
31
February, 2023
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
1
October, 2017
Available data
47
bed narrowPeak
31
bam
24
fastq
22
bigWig
19
bigBed narrowPeak
6
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
Organism
65
Homo sapiens
Biosample type
60
tissue
5
primary cell
Organ
928
pancreas
784
liver
680
connective tissue
490
adipose tissue
489
epithelium
345
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
65
AMP
Genome assembly (visualization)
48
hg19
22
GRCh38
Lab
65
AMP-T2D consortium
month_released!
October, 2019
BIOSAMPLE
ASSAY
65 results
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ATAC-seq
ChIP-seq
DNase-seq
total RNA-seq
WGBS
RRBS
pCHi-C
tissue
spleen
1
20
1
2
1
retina
15
3
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
3
1
1
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