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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
19
total RNA-seq
18
ChIP-seq
5
DNase-seq
5
pCHi-C
2
WGBS
1
RRBS
Assay category
34
DNA accessibility
19
Transcription
18
DNA binding
3
DNA methylation
Target of assay
9
control
9
histone
9
histone modification
transcription factor
5
narrow histone mark
4
broad histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
31
February, 2023
21
October, 2019
7
January, 2019
6
June, 2019
6
November, 2018
4
December, 2018
1
February, 2020
1
July, 2019
1
March, 2020
1
October, 2017
Available data
40
bed narrowPeak
24
bam
18
fastq
15
bigWig
12
bigBed narrowPeak
6
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
Organism
79
Homo sapiens
Biosample type
75
tissue
4
primary cell
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
344
kidney
341
heart
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
41
hg19
15
GRCh38
Lab
79
AMP-T2D consortium
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
79 results
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ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
WGBS
RRBS
tissue
islet of Langerhans
1
14
2
4
retina
15
3
3
spleen
1
14
1
1
2
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
2
1
1
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