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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
15
total RNA-seq
8
snATAC-seq
4
DNase-seq
4
pCHi-C
2
ATAC-seq
1
RRBS
Assay category
65
DNA binding
15
Transcription
14
DNA accessibility
1
DNA methylation
Target of assay
52
transcription factor
11
RNA binding protein
10
chromatin remodeller
7
control
4
histone
4
histone modification
4
narrow histone mark
Date released
February, 2023
27
December, 2018
21
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
7
June, 2019
1
February, 2020
1
January, 2018
1
July, 2019
Available data
67
bam
61
bigWig
60
bed narrowPeak
60
bigBed narrowPeak
60
fastq
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tsv
Organism
99
Homo sapiens
Biosample type
61
cell line
25
tissue
13
primary cell
Organ
883
pancreas
791
liver
669
connective tissue
489
adipose tissue
472
epithelium
357
heart
354
kidney
285
brain
201
vasculature
195
blood vessel
151
bone element
122
limb
106
artery
96
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
30
eye
25
spleen
22
vein
19
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
91
AMP
8
T1D
Genome assembly (visualization)
62
hg19
60
GRCh38
Lab
91
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
February, 2023
BIOSAMPLE
ASSAY
99 results
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ChIP-seq
total RNA-seq
snATAC-seq
DNase-seq
pCHi-C
ATAC-seq
RRBS
cell line
GM12878
60
1
tissue
islet of Langerhans
2
14
4
1
retina
1
3
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
3
1
1
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