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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
40
DNase-seq
36
ATAC-seq
26
total RNA-seq
4
Hi-C
4
pCHi-C
1
RRBS
1
WGBS
Assay category
76
DNA accessibility
71
DNA binding
26
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
52
histone
52
histone modification
34
broad histone mark
18
control
18
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
90
October, 2019
39
June, 2019
31
February, 2023
7
May, 2019
6
February, 2021
6
July, 2019
4
February, 2020
Available data
125
bed narrowPeak
121
bam
97
bigWig
90
bigBed narrowPeak
40
bed bed3+
40
bed broadPeak
40
bigBed broadPeak
12
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
183
Homo sapiens
Biosample type
178
tissue
5
primary cell
Organ
938
pancreas
791
liver
683
connective tissue
523
epithelium
490
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
19
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
183
AMP
Genome assembly (visualization)
130
hg19
102
GRCh38
Lab
183
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
183 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
islet of Langerhans
3
1
14
4
muscle of leg
7
13
1
retina
3
15
3
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primary cell
retinal pigment epithelial cell
3
1
1
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