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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
29
ATAC-seq
19
total RNA-seq
8
snATAC-seq
4
DNase-seq
4
pCHi-C
1
RRBS
Assay category
58
DNA binding
41
DNA accessibility
19
Transcription
1
DNA methylation
Target of assay
52
transcription factor
11
RNA binding protein
10
chromatin remodeller
control
4
histone
4
histone modification
4
narrow histone mark
Date released
31
February, 2023
27
December, 2018
21
October, 2019
15
January, 2019
12
November, 2018
8
January, 2021
6
June, 2019
1
February, 2020
1
January, 2018
1
July, 2019
Available data
87
bed narrowPeak
61
bigWig
60
bam
60
bigBed narrowPeak
54
fastq
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
123
Homo sapiens
Biosample type
56
tissue
55
cell line
12
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
342
kidney
333
heart
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
115
AMP
8
T1D
Genome assembly (visualization)
89
hg19
60
GRCh38
Lab
115
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
target.investigated_as!
control
BIOSAMPLE
ASSAY
123 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
tissue
islet of Langerhans
2
1
14
4
retina
15
3
3
pigmented layer of retina
12
2
cell line
GM12878
54
1
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
2
1
1
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