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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
DNase-seq
4
pCHi-C
3
ChIP-seq
1
RRBS
Assay category
32
DNA accessibility
19
Transcription
3
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
control
transcription factor
Date released
31
February, 2023
21
October, 2019
5
June, 2019
1
February, 2020
1
July, 2019
Available data
32
bed narrowPeak
5
bam
5
bigBed narrowPeak
5
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
59
Homo sapiens
Biosample type
56
tissue
3
primary cell
Organ
874
pancreas
609
connective tissue
485
epithelium
450
adipose tissue
345
liver
332
kidney
321
heart
252
brain
205
vasculature
201
blood vessel
159
bone element
127
artery
105
limb
90
musculature of body
59
eye
32
nerve
27
embryo
20
lung
20
vein
18
ureter
16
skeleton
12
blood
12
bodily fluid
11
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
33
hg19
5
GRCh38
Lab
59
AMP-T2D consortium
target.investigated_as!
control
transcription factor
BIOSAMPLE
ASSAY
59 results
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ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
ChIP-seq
RRBS
tissue
islet of Langerhans
1
14
4
2
retina
15
3
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
1
1
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