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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
DNase-seq
pCHi-C
2
ChIP-seq
1
RRBS
Assay category
32
DNA accessibility
19
Transcription
2
DNA binding
1
DNA methylation
Target of assay
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
15
October, 2019
6
June, 2019
1
February, 2020
1
July, 2019
Available data
32
bed narrowPeak
6
bam
5
bigBed narrowPeak
5
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
54
Homo sapiens
Biosample type
50
tissue
4
primary cell
Organ
794
pancreas
686
liver
601
connective tissue
457
adipose tissue
431
epithelium
322
kidney
288
heart
164
vasculature
159
blood vessel
158
bone element
121
artery
97
brain
73
limb
68
blood
68
bodily fluid
62
musculature of body
54
eye
25
embryo
19
lung
19
nerve
18
spleen
18
ureter
16
skeleton
7
vein
2
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
54
AMP
Genome assembly (visualization)
33
hg19
5
GRCh38
Lab
54
AMP-T2D consortium
target.investigated_as!
histone
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
54 results
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Clear Filters
ATAC-seq
total RNA-seq
DNase-seq
ChIP-seq
RRBS
tissue
retina
15
3
3
islet of Langerhans
1
14
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
2
1
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