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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
38
ChIP-seq
4
DNase-seq
single cell RNA-seq
1
pCHi-C
Assay category
56
Transcription
49
DNA accessibility
38
DNA binding
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
9
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
30
October, 2019
5
May, 2019
3
July, 2019
2
February, 2020
2
June, 2019
1
March, 2020
Available data
102
bam
85
bigWig
74
bed narrowPeak
57
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
144
Homo sapiens
Biosample type
76
tissue
66
cell line
2
primary cell
Organ
872
pancreas
790
liver
680
connective tissue
491
adipose tissue
454
epithelium
290
kidney
283
brain
260
heart
230
vasculature
224
blood vessel
159
bone element
139
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
144
AMP
Genome assembly (visualization)
128
GRCh38
93
hg19
Lab
144
AMP-T2D consortium
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
144 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
pCHi-C
tissue
coronary artery
1
36
5
2
tibial artery
1
1
23
2
islet of Langerhans
4
ovary
1
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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